The through-line of my work is simple: most of the biology that matters to public health and agriculture is invisible to the naked eye, but sequencing lets us read it cleanly. I'm interested in the organisms we overlook — soil Stenotrophomonas, predatory Bdellovibrio, the bacteria hiding inside a beef carcase — and in what their genomes tell us about how to act.
In the lab, I assemble genomes, annotate them, and compare them against public reference sets to answer applied questions: which strain is this, what can it metabolise, does it carry antimicrobial resistance, how did it get here. In the field, I've worked with crude-oil-contaminated soil in Tabasco, with textile effluent in Tepetitla, and now with livestock samples from across the U.S.
I also teach. I believe the best way to train a new microbiologist is to run the pipeline in front of them with a real dataset and narrate every choice. My tutorial series on this site is the long-form version of that belief.
The short version of where I've worked and what I was trying to read from the organisms I was holding at the time.
Reading African fiction (Adichie, Tutuola, Okri). Cooking jollof with the kind of stock my grandmother would judge. Long walks where I try and fail to mentally assemble a genome from scratch.